Rita Mormando

Okay the weirdest thing happened...it worked??? I reran the SAME code last night with my sample and it went all the way through and gave me phased fastq files? I...

I hope so too! I have a feeling it might've been a fluke though just based on the number of fastq files it resulted in... This is what the _covVis.png...

I believe the coverage should be about 170X - but I'm not exactly sure how to check. I ran both using the same raw long reads (ONT). Is there a...

Okay I ran that command with the raw reads in Filtlong and was able to come up with 17,754kb as the mean read length, which comes up to ~48X coverage!...

Hello again! I reran the pipeline with the filtered reads after getting those results from Filtlong and the results are strange again... Here is the _covVis.png: and here is the...

I completely agree…these results are confusing me as well. I went back to the command I used and made sure it was the corrected long read file, which it was....

Hi! I left you an email earlier today but in case it's easier to respond here I have some results with the new run I was able to finish! ...

Did you ever figure out this error? I'm having trouble as well

**UPDATE:** When I take out the `ASSEMBLY` variable and leave it blank I get this output: ``` --------------------------------------------------------------------------- ------------------------> plotVCF v0.0.0.9001 input VCF file: myFILE.vcf -> input assembly: hg38 ->...

Did you ever figure out this error? I'm having similar issues as well