Rita Mormando
Rita Mormando
Thank you! I had to exit my terminal once I ran the code so I missed going back to look at the kmer plots on the `stderr` This is what...
Glad to hear the log file looks fine. This is a yeast genome - which is normally about 12Mb - but I believe it is also tetraploid meaning it has...
I get the same error message when I try to run it as well...did anyone find a solution?
It looks like there is data in both the long read and short read mapping folders but there are two empty folders (FastQ and Plots) in the Phased folder, which...
Hello! I'm so sorry for the long wait - I started working through other projects but I have finally circled back to this issue and I have some updates. I...
I ran through the pipeline with the example data and it went all the way through and finished fine so I am going to go back and rerun it. I'll...
Hello again! I reran the pipeline and it ended at virtually the same spot: This was printed in the STDOUT: ``` Long reads successfully mapped to reference Removing quality 0...
I noticed that too! I thought it was weird! I'm glad I wasn't seeing things... I used conda to activate polyploidPhasing and then I use this command (with nohup and...
It writes the STDOUT (and whatever prints to the command line - so I'm assuming the STDERR as well) to a txt file called: nohup.out It should work the same...
Hi again! I ran it again with the example data using nohup and & and the log files didn't show any signs of duplications in the process. So I'm back...