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Support for CSI indexing

Open brettChapman opened this issue 2 years ago • 2 comments

Hi

Will there be support for CSI indexing? Currently I'm getting errors when I run createVCFplot. It tries to index with TBI and recommends I use CSI indexing.

I'm working with a large plant genome.

Thanks.

brettChapman avatar Feb 22 '23 05:02 brettChapman

Did you ever figure out this error? I'm having similar issues as well

rmormando avatar May 09 '23 19:05 rmormando

I've also encountered this issue. Pisum (Lathyrus oleraceus) ZW6 genome contains coordinates too large for tbi indices. Got this error from bcftools index:

[E::hts_idx_check_range] Region 537909476..537909477 cannot be stored in a tbi index. Try using a csi index CSI index can be built, but it is ignored by plotVCF.

Michael-Zelenoborsky-Long avatar Sep 29 '24 20:09 Michael-Zelenoborsky-Long