Ramya Madupuri

Docker compose - https://github.com/cBioPortal/cbioportal-docker-compose uses the 4.1.13 version as the `latest` release. Release 5.0.1 (with SV support) is still in `pre-release` state. **Issue:** There is incompatibility between the data updates...

# What? Fix #1099 Data Availability: - https://www.bcgsc.ca/downloads/POG570/cbioportal/ (shared by author Dr. Erin Pleasance) - Supplemental Tables - Also available in https://www.personalizedoncogenomics.org/cbioportal/ Profiles added: - [x] Clinical, Survival - [x]...

New data release: 2022-05-31 Paper: https://pubmed.ncbi.nlm.nih.gov/35649412/ Data Available at - https://www.synapse.org/#!Synapse:syn17038081/wiki/585622 Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before...

Snyder et al. Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: An exploratory multi-omic analysis. PLOS Medicine 2017

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https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002309 Data seems to be available at : https://github.com/hammerlab/multi-omic-urothelial-anti-pdl1 & https://zenodo.org/record/546110#.YoKbx5PMIQ8 Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before...

Validation script enhancements

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TODO List: - [ ] Update the validation script to use portal API instead of the static json files (dependent on gene table clean up which addresses duplicate entrez id...

Fujimoto et al. Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity. Nat Commun 2015

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https://pubmed.ncbi.nlm.nih.gov/25636086/ Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this...

Verhaak et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 2010

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https://pubmed.ncbi.nlm.nih.gov/20129251/ Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this...

Expand TCGA Pancan clinical data

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Cancer studies updated in this pull request: ACC, BLCA and BRCA **Data Source:** GDC: https://gdc.cancer.gov/about-data/publications/pancanatlas File Used: Clinical with Follow-up - [clinical_PANCAN_patient_with_followup.tsv](http://api.gdc.cancer.gov/data/0fc78496-818b-4896-bd83-52db1f533c5c) **Clinical attribute definitions are obtained from:** 1. CDE...

TCGA. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. NEJM 2015

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https://pubmed.ncbi.nlm.nih.gov/26061751/ Study in Mercurial: http://data.cbioportal.mskcc.org/hg/cbio-portal-data/file/tip/studies/lgg/tcga/pub Please keep this checklist for curation of a new study. - [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per...

- Updated seedDB based on HGNC OCT 1 2022 download. - hg19, hg19/hg38 version updated to schema 2.12.14