Ramya Madupuri

@inodb can we transfer this issue to the cBioPortal git repo? It is not data related as Sander pointed above. The code seems to be changing the values to Title...

**Data Available:** - Table S1: Clinical - Table S3: SV (only key genes) - Table S4: MAF (only key genes) **Data Missing:** - Request whole genome MAF(hg38 ref), RNA-seq, SV,...

Hi @alexsigaras, thank you for the PR. The data formats look good! Some fixes are required before we can merge, 1. Can you add the Oncotree Codes (http://oncotree.mskcc.org), cancer Type...

Testing instance of the study: https://triage.cbioportal.mskcc.org/study/summary?id=ccrcc_wcm_2022

Thank you for the updates @alexsigaras. The fixes look good! One additional issue that we noticed with the MAF - there are ~500 variants with either the position is off...

HI @alexsigaras just checking, do you have an update for the above issue? Thanks!

**Cohort Stats:** 138 cases - 49 newly sequenced and 89 publicly available cases (also includes a few TCGA Lung Adenocarcinoma cases) - data analyzed in a unified pipeline **Data Availability:**...

**Cohort Stats:** 570 pats - profiled using whole-genome and transcriptome sequencing **Data Availability:** Clinical data - Supp Table 1, 2 Mutation rates - Source Data Extended Data Fig. 2 Mutational...

**Data Available:** - RNA-seq for 119 samples (hg38) - Supp 2 - Variant calls from selected subset of genes (hg19) - Supp 3 **Data Missing:** - Clinical/survival data - Targeted...

**Cohort stats:** 202 patients/ 249 met samples **Data availability:** RNA-seq - 119 samples analyzed - data in Supplement 3 MAF - 85 patients were targeted sequenced - data in Supplement...