Tiago da Silva Ribeiro

icon company UW-Madison icon location Madison, WI icon location Evolutionary biologist. Animal evolution, quantitative and population genetics, adaptation.

Results 2 issues of Tiago da Silva Ribeiro

consensus --iupac-codes outputting ambiguity on GT=1/1 sites

6 comment

Hi all, This is similar to an issue posted before to which I didn't find a solution. I am using bcftools consensus with --iupac-codes and the output has ambiguity codes...

documentation

filter-sample-max-read-depth options

4 comment

Would it be possible to have the max read depth be a percentile? For example, set it to 0.98 to exclude reads with depth in the top 2% highest coverage....