Tiago da Silva Ribeiro

icon company UW-Madison icon location Madison, WI icon location Evolutionary biologist. Animal evolution, quantitative and population genetics, adaptation.

Results 2 comments of Tiago da Silva Ribeiro

consensus --iupac-codes outputting ambiguity on GT=1/1 sites

By replacing `-I` with `-H I` on the command above I get the following output: > Can't apply 25-th haplotype at 1:40524 This is the site in the vcf file:...

filter-sample-max-read-depth options

Thank you, Lucas. Yes, I think you understood my suggestion correctly. It is a feature that is implemented in PoPoolation, too - that is where I first saw this kind...