Jeff Rhoades

icon company Janelia Research Campus icon location Ashburn, VA icon location Machine Learning Engineer @janelia-cellmap with a PhD in Neuroscience

Results 10 issues of Jeff Rhoades

Feature Request: Python API

2 comment

Would love to be able to utilize this easily in Python. Bonus points if you can set it up as a backend to an already well-developed mesh package (e.g. Trimesh,...

help wanted

3D support

Would love to have this support Conv3D as well, especially for converted models.

Cellpose - don't merge

1 comment

Dev/brianreicher tasks

Incorporate tasks, targets, etc. for CARE, Pix2Pix, and CycleGAN as implemented by @brianreicher

enhancement
feature

Resampling should be configured when constructing batch providers, not in array configs

5 comment

Target resolution should be specified by Task config

2 comment

Configurations from YAMLs

1 comment

Simplify configurations to be generatable from user written YAMLs. Infer as many details as possible to make configurations more succinct.

Optimizer should be set up with a config (like augmentations)

Config file should live in dacapo/experiments/trainers/optimizers/ https://github.com/janelia-cellmap/dacapo/blob/62d627807b6bff55cf51d015de55144f2c8956cd/dacapo/experiments/trainers/gunpowder_trainer.py#L52

good first issue
invalid

Update dev/main

Update resampled_array.py

Allow resampled array to implicitly handle requests for non-integer scaling of the source array by finding the common multiple voxel size of the source array and request.