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Resampling should be configured when constructing batch providers, not in array configs

Open rhoadesScholar opened this issue 2 years ago • 5 comments

rhoadesScholar avatar Feb 14 '24 21:02 rhoadesScholar

ResampledArrayConfig should be a deprecated class.

rhoadesScholar avatar Feb 14 '24 21:02 rhoadesScholar

Same with BinarizeArrayConfig, MergingInstances, etc....

rhoadesScholar avatar Feb 14 '24 21:02 rhoadesScholar

Make CSV for the datasplit contruction with columns:

  1. train/validate/test
  2. raw_path
  3. GT_path
  4. [weight] default = 1
  5. ....

rhoadesScholar avatar Feb 14 '24 22:02 rhoadesScholar

Given the run constructor is getting info about the task and model, can we generate all necessary array configs from metadata found at zarr paths?

rhoadesScholar avatar Feb 14 '24 22:02 rhoadesScholar

Add "resolution" to TaskConfig --> automatically resample incoming arrays to the correct resolution

rhoadesScholar avatar Feb 14 '24 22:02 rhoadesScholar