Reed A. Cartwright

I appreciate the `doctest_discover_tests()` functionality that exists for CMake. I was wondering if a similar functionality was available or possible for Meson.

Using TEST_CASE_CLASS outside of a class's definintion.

3

I am trying to come up with a TEST_CASE_CLASS-like macro that can be used to wrap a class and provide access to protected variables, but does not have to be...

Zstd Support

19

An undergrad is the lab is looking into how modern compression algorithms work with genomic data. Long story short, it looks like there are justifications to use LZ4, ZSTD, and...

Memory issues in bcf_get_format_values (and other places that use realloc)

2

## 1. Memory leaks caused by failed `realloc` function. `bcf_get_format_values` uses `realloc` internally to resize as needed the memory block pointed to by `*dst`. E.g. ```C if ( *ndst <...

Readme.md still lists Rachel's ASU email address.

Assigning Tasks

2

With development of SISRS taking off this semester in two locations, it is important that we figure out who is addressing which issue or pull request. The easiest way to...

Try Different Mappers

1

Support the following mappers - [ ] BWA-MEM - [x] Bowtie 2 - [ ] NextGenMap - [ ] BBMap

It should be possible for SISRS to report which assemblers, mappers, etc. are installed and tell the user what options they can use.

Alternative chunk line visualization

2

Would it be possible to implement a chunk line visualization using the same png techniques as used to display slime chunks, sim distances, and spawning areas?

call_wd() returns wrong directory in tests run by run_test_dir()

1

First, assume that `getwd()` returns "pkg". Then if I run tests via `run_test_dir("tests")`, and use `call_wd()` to access the previous working directory, it will return "pkg/tests" instead of "pkg". I...