Robert Butler
Robert Butler
I am trying to print a multipage pdf of stacked violin plots, for several gene sets. It normally works when all genes are found in variable count. However, in some...
Hi all, [Looking through](https://github.com/satijalab/seurat/blob/f1b2593ea72f2e6d6b16470dc7b9e9b645179923/R/differential_expression.R#L2023) `PrepSCTFindMarkers`, it doesn't look like it is using future to speed up its `lapply` calls, and it is notably slow for me. I think for ~136k...
Hello, I ran into an issue plotting two manhattans and labeling the SNPs. If you feed it a list of SNPs for highlight.text, it will always label the first one...
Hello, When parsing a .gbf generated by tbl2asn, such as one that is being prepared for submission, the ACCESSION fields for each locus will be empty (not assigned by genbank...
When setting up systemd, if you enable it prior to creating the service file, you will get an error: ``` wsl.exe -d wsl-vpnkit --cd /app cat /app/wsl-vpnkit.service | sudo tee...
Hi, I am batch converting many `isxd` movies to `h5` via the command line. Is there an option to specify a path to the Inscopix software installation in my script?...
Similar to [this plot](https://stackoverflow.com/a/34032611/8034603), I want to be able to create fill color breaks corresponding to particular quantiles of my dataset (and use `ggdensity`), but when I try to specify...
If I try to filter my results in `getBM` by `chromosome_name`, it works for numbers only, or letters only, but not both (i.e. 1-19 with X and Y): ```r library(data.table)...
Hi, I am trying to use my matched snRNAseq and CosMx data to predict cell types for the CosMx data from the snRNAseq. I generally have the code together (See...
Hello, I am looking at a large hdf5 file and trying to extract a matrix convert it to a sparse matrix. The source file and code below. It works for...