Robert Butler

The simplest workaround I have found was just to look at the intersection of the gene list and the rownames of the active assay. This in effect disables looking at...

To touch back on this since I was just plotting the RNA assay. The easiest way I have found to exclude the zero count is just `rowSums(sc) > 0`. So...

That seems a messy solution to the issue. Now there is a source line in your bash scripts that has to explicitly reference your conda installation path, making them not...

Sounds Good.

Hi @mhovd , thanks for the solution. Do you know if there is a way to reduce or eliminate the gray padding around the `svg` object?

Hi @igrabski , I am getting the same error on a different dataset. Working on a repro, but here is my code in case it provides a clue: ```r #...

@zh-zhang1984 it turns out you can pass it as a formula with `patchwork`: ```r library(patchwork) library(ggplot2) library(circlize) p1

Excellent! Yes that does work to wrap the whole thing:  Also, the link to the grid/cowplot method: https://github.com/jokergoo/ComplexHeatmap/issues/735

Still occurring, for fixed version specification. If I use: ```r mouse = useEnsembl("ensembl", dataset="mmusculus_gene_ensembl", version="105") human = useEnsembl("ensembl", dataset="hsapiens_gene_ensembl", version="105") # match with ensembl_gene_id across both x = data.table(getLDS(mart=mouse, attributes=c('ensembl_gene_id'),...

It is off by default without adding your ID to the `_config.yml`, but if you are updating documentation it is probably worth a more explicit warning in the Configuration section....