Remco Bouckaert

@Anaphory could you make an XML file available that behaves like this so I can investigate where things are going wrong?

Hi Tim, good point. One way to reduce log sizes is to use fewer significant digits in real values that are logged (there is a `dp` input on `TreeWithMetaDataLogger` that...

The problem still exists: With v2.5.0, start BEAUti (uses Standard template) Import alignment Primates.nex Select both partitions, link trees Save file Restart BEAUti Load file Select both partitions, unlink trees...

Just to clarify: BEAST classes should not use stdout and stderr directly, but should produce output through the `Log` class, which has 5 PrintStreams: error, info, warning, debug, trace. By...

You are right that the philosophy behind the use of the `Log` class is not consistently implemented, and indeed it would be good to review the code for this. If...

Having a `MultiMonophyleticConstraint` on a `PrunedTree` (both classes are in BEASTLabs) solves the problem posted on the userlist as well.

@AndreaGarcia666 The error message suggests that the starting tree is not compatible with the prior for Porites colonensis, perhaps because the starting tree is younger than the lower bound of...

Not sure what is happening, but can you try the following: remove the following BEAST directory `C:\Users\\BEAST\2.5\BEAST` on Windows (where you replace `` with your user name, `/Users//Library/Application Support/BEAST/2.5/BEAST` on...

This may have something to do with the version of Java on your computer. Have you tried to run BEAST/BEAUti with java included (available from www.beast2.org)?

This is at the end of the error log Gideon sent me: OpenCL error: Unknown error from file , line 115. which suggests something is going wrong with OpenCL on...