Ramprasad Neethiraj
Ramprasad Neethiraj
Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...
Patch
## PR checklist - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be tested,...
### Description of feature It would be nice to have entry points for different parts of the pipeline ex. snv/sv annotation, mitochondrial analysis.
### Description of feature Consider adding BPHunter to detect variants that disrupt intronic branchpoints. https://hgidsoft.rockefeller.edu/BPHunter/index.php https://pubmed.ncbi.nlm.nih.gov/36306325/
### Description of feature Considering adding aws full pipeline tests (TODO in awsfulltest.yml)
### Description of feature Add full-sized test dataset and amend the README to include the information about the dataset.
### Description of feature Some of the annotation programs used in the pipeline only generate vcf outputs. It would be good to make changes to those modules so that they...
### Description of feature Would be nice to have a subworkflow that will allow the user to download all the necessary references to run the pipeline.
**Is your feature request related to a problem? Please describe.** It would be nice if we can move [this](https://github.com/nf-core/tools/blob/master/nf_core/pipeline-template/docs/usage.md#azure-resource-requests) section from the pipeline template to the website to simplify the...
As discussed in the nf-core maintainers meeting, I have updated the guidelines for creating new modules to add a meta map to channel definitions that carry reference file inputs.