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                                            MingMin Xu

What are the differences of the pearson matrix generated by hicPCA and hicTransform?

Hello， For A / B compartments analysis, I plot the A / B compartments based on the pearson matrix. The pearson matrix was generated by two tools (hicPCA and hicTransform)...

Inconsistent transcript abundance estimates between RNA-seq and Iso-seq

Hello, The SQANTI3 (https://github.com/ConesaLab/SQANTI3) pakage can estimate isoform abundance using two methods: 1). TPM value is measure by full-length transcript count (from Iso-seq data) as FL_TPM= (raw FL count/total FL...

The consistency of 5mC methylation generated by DeepMod and DeepMod2

Hello, Thanks for your great efforts to develop a series of useful tools detecting methylation across the genome, including DeepMod and DeepMod2. The first question is: do you assess the...