Patrick Avery

FYI: this is currently incomplete. It DOES compile. But it has a few issues. Two issues I have noticed so far: 1. It isn't automatically adding hydrogens correctly. 2. The...

Unfortunately, it seems that a lot of people use multiple entries in the xyz format for different reasons, and there isn’t a clear standard for them. Avogadro2 often uses multiple...

Looks like the "colorSpace" in the state file is `CIELAB`.

Strange - I gave it a quick try on my personal Windows PC this morning (with the sample tilt series), and it seemed to work okay.

I have unfortunately seen this before. I believe it happens specifically when you are using the internal pipeline, and you don't have a description.json file associated with the operator (where...

I spoke with @cryos and we are planning to keep the intermediate data sources, and fix the broken pipelines. We typically want long-running operators to produce intermediate data sources, and...

Yeah, re-looking over the source code for creating the TVH5 files, this is roughly what happens (in this order): 1. Write standard EMD file (using the currently selected data source)...

Looks like this specifically happens with the "Allow Multi Volume" box checked, and is probably specific to the multi volume features.

So, the big case we know of here that requires a conversion to Fortran ordering after loading are raw files written with numpy. Numpy always writes out raw data files...

That error is [here](https://gitlab.kitware.com/vtk/vtk/blob/master/Rendering/VolumeOpenGL2/vtkVolumeTexture.cxx#L746) in VTK. The `AreDimensionsValid()` function checks to make sure that none of the dimensions exceed the max size of the texture, GL_MAX_3D_TEXTURE_SIZE, which I believe is...