polchan

What is the strategy for Ultra-long ONT integration?

6

Hello, Cheng! I would like to ask about the strategy for using Ultra-long ONT integration. Is the purpose of the ONT sequence to assist with scaffolding, or will it be...

Fatal error: fasta.cpp:594 in ApplyActionReport(...): Assertion failed: row.size() == 8 || old_style

2

Hello, I encountered some issues when using the `conda` version of `gx` due to lacking root permissions, which prevents me from using `gx` under dock or singularity. Here are the...

Giraffe alignment is very slow and produces warning[vg::Watchdog] messages unless rescue is disabled

14

Dear VG Team Members, I hope this message finds you well. While using the vg giraffe tool to align short reads, I encountered an issue similar to the one described...

Why are the obtained organelle sequences identical?

1

Hi, Zhou Thank you very much for providing such an efficient tool. However, I have encountered some issues while using OATK: I am using HiFi reads with an average coverage...