polchan
polchan
> Giraffe assumes that most reads map to one place in the graph and that secondary alignments are usually much worse than the primary alignment. If that's not the case...
Giraffe alignment is very slow and produces warning[vg::Watchdog] messages unless rescue is disabled
> Hi, it could be the same problem #4207. I have solved this problem. @zhangyixing3 Thanks your reply. I have been exploring various solutions to address the issue at hand....
Giraffe alignment is very slow and produces warning[vg::Watchdog] messages unless rescue is disabled
@zhangyixing3 In fact, all my samples belong to the same species, and the graph I used includes these species as well, making it unlikely that the issue is due to...
Fatal error: fasta.cpp:594 in ApplyActionReport(...): Assertion failed: row.size() == 8 || old_style
Eric, Thank you very much for your detailed response. I will follow your suggestions and give it a try. Best Regards! Bocheng
Thanks very much for your response. We have a new question! We have identified sequences not only from CCS but also from ONT (SRR24941509) in the gfa file. However, we...