phil622

How to use MCScanX's result in jcvi?

2

First,thanks for this wonderful tool This is my question: I transform the .collinearity file from MCScanX to .anchor file use this command: python -m jcvi.compara.synteny fromaligns mc.collinearity But the .anchor...

How to input the eigenvertor result into the juicebox to visualization.

3

When i use the juicer eigenvector to get a result file. But i can not put the result into the juicebox. What should i do to switch the result file...

The gene result is little

3

I use braker to process an insect with 6 samples rseq data, but the final result is only have 6000+ gene. Is that correct? I think it is kind of...

the problem of partiition

10

Hi, I skip the prunning part and when i use this command: ALLHiC_partition -b sample.clean.bam -r draft.asm.fasta -e GATC -k 9 the result give me 235 groups. I only set...

Sorry, I am not have an Install new tools button in my Admin panel. How can I install new tools Thank you

I use carveme to generate model and run smetana with --solver CPLEX however ,it return this error: Loading community: all Running SCS for community all on medium M9... Running MUS...

Problem with Saddle-analyses

1

Thank you for your excellent software. However, when i run the Saddle-analyses, with code: visualise(saddle_out) My output are weired in AA region: those region like no signal, is that normal？