phil622
phil622
i have the same problem....
this is my command: braker.pl --cores 40 --species=Callo --genome=Callo_polished.fasta.masked --softmasking --bam=Callo1.sorted.bam,Callo2.sorted.bam,Callo3.sorted.bam,Callo4.sorted.bam,Callo5.sorted.bam,Callo6.sorted.bam --gff3
the result of augustus.hints.gtf have only 1000+ genes, and the result of braker.gtf also have no more than 7000 genes.
Hi i meet the same question, and the log is this:
not yet. so i should check my Hi-C data throuth HiC-Pro first?
hello I have test my data through HiC-Pro, and the mapping rate is 80% almost, so i think my data is high-quality now i am thinking if it is the...
but my reported-pairs rate only 34.8%, so i don't know if my data is high-quality.
the valid pairs rate are 70%, but the cis long rate are only 20%
Now, I also do the pruning part, but it still have the same problem in the partition part. How can i do for that. Thanks.
There are my HiC-Pro results.   