Patrick Cahan

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis...

Hi, Thanks for the interest in CellNet. _geneToTrans_Homo_sapiens.GRCh38.80.exo_Jul_04_2015.R'_ is bundled as part of the index (e.g. salmon.index.mouse.052617.tgz) that is used in the pre-processing steps. Please let us know whether this...

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis...

Hi, thank you for your interest in PACNet. Thank you for reporting this issue. I have updated the permissions on AWS, and these files should be accessible now. Please let...

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis...

We have now created a web application that takes as input an expression matrix (counts, TPM, or FPKM), and sample meta-data, and performs CellNet analysis. Additionally, this tool includes analysis...

Hi, Thank you for your interest in SCN. We used https://www.genenames.org/tools/hcop/ to generate an initial list of orthologs. Then we generated a final ortholog table by finding pairs in which...

Hi, Thanks for your interest in using CellNet. Are you running this on AWS? Which branch are you using? Can you share the precise steps have taken up to the...

Thanks for providing that information. I'll look into this...

Hi, Can you try running with out latest version (https://github.com/pcahan1/CellNet/tree/v0.2.2) instead of the one listed in the protocols: >>> install_github("pcahan1/CellNet", ref = "v0.2.2")