Oscar Ortega

Use python dict to support bngl hash type arguments in console actions

2

This adds support to use bngl hash type arguments like max_stoich that are passed to generate_network. I use f-strings because i feel it is easier to read, but most of...

Add support to MultiState in the render_species function

Scipyode progress bar

1

Add progress bar when running simulations with scipyode

Add units to model parameters, expressions, species

4

Hi, mistakes in units can lead to unexpected simulation results and some times hard to interpret results. Dimensional errors happen quite often. Would it be too hard to add dimensional...

Specify reaction/species id to focus only on those reactions/species

Development suggestion: It might be cool to add in a feature for node-centric dynamic visualization that shows how a single species/group is both produced and consumed over time. I'm thinking...

Development suggestion: It might be good to give users the option to specify their own normalizations. I'm thinking of a case where you might want to compare dynamic visualizations from...