Oscar Ortega
Oscar Ortega
In https://github.com/pysb/pysb/pull/458 I tried to address this issue by adding a dashed edge for each species that appear in an Expression. Small example: [expression_graph.pdf](https://github.com/pysb/pysb/files/3503224/expression_graph.pdf)
Just added the requested test. Also, I change the exporters so that the `generate_equation` is only called when the model has not generated the equations before. I think that can...
Hi! I work in the Lopez lab at Vanderbilt University, we are one of the labs that maintains and develops PySB. I would be more than happy to help with...
I checked the ecell4 tutorials and saw that now you support rule-based modeling. I am not sure what was your plan for supporting PySB, but maybe we could start by...
ohh a hackathon sounds fun. And yes this is a list with multiple pysb examples: https://github.com/LoLab-VU/pysb/tree/master/pysb/examples
When you use the cx format the style of the graph (background-color, etc) is supposed to be included in the cx graph and cyjupyter tries to get that from the...
Hi, sorry for the delay! I’ll take a look this weekend!
what python version are you using and are you using mac/linux or windows?