Hayley comments

Results 6 comments of


                                            Hayley

Error in split.default(lis_obj, names(lis_obj)) :

I think this error resulted from "chromosome name" If you edit "1" to "chr1", you can fix it.

Error in infer.clonal.models: No clonal models for sample

OMG. I found something. @edceeyuchen I got the same error, But I changed the options "monoclonal" to "polyclonal". It worked well!!

Spot diameter of 10X visium

Yes, I'll check it! Thank you so much @sqjin. Then, when I set 65um for visium spot.size, I couldn't get the min value (100um). > min(d.spatial[d.spatial!=0]) #this value should approximately...

Spot diameter of 10X visium

Dear @sqjin, I'm contacting with 10X genomics team about this issue. If you want to know the reason, I'll share it with you! Thank you.

CNV calling

Dear @tobiasrausch, Hi I'm Oh. Thanks for your reply. Have a nice day! Oh.

Seeking Advice on Causal Inference for Treatment Effect Prediction (Small Sample, Genomic Covariates)

@erikcs Thank you for the excellent response. It was really helpful. Thanks!