Lang Chau comments

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                                            Lang Chau

ggmsa plot error due to unique names

Hi @akjrobijns, **unique names** request that there is no duplication for full sequence name, and the same prefix "Alyli" is allowed. For example: - [x] "Alyli.0014s0106" and "Alyli.0091s0126" is allowed...

Note: wrong number of arguments to 'seq_len'

Thanks for the reminder. Although this does not affect the use, we will investigate the cause as soon as possible.

Protein secondary structure & domain annotation

Hi, @gezmi > I have 2 feature request: would it be possible to add protein secondary structure annotation (helices and beta-sheets) and also domain annotation (similar to the biotite package...

Feature Request: Consensus View

Got it.

Feature Request: Consensus View

Sorry for the late reply. We added the Consensus View to the `ggmsa` by referring to `Geneious`. The feature shown below can be implemented by installing the dev version of...

Feature Request: Consensus View

Hi, @kcamnairb Using` install_github('YuLab-SMU/ggmsa')` to install the dev version, the version in "nyzhoulang/ggmsa" has stopped updating.

Geom_Logo masks the first line of sequence alignment

Hi,@ @nunder Sorry for the late reply. This error cannot be repeated on my local computer. If you can provide data to reproduce the problem, I will be better able...

Geom_Logo masks the first line of sequence alignment

Hallo, Nick I repeated the issue by data you provided. I find that the numbers of `tip.labe` in tree data and the `sequence`in MSA data are inconsistent (80 vs 68)....

Problems with tree, MSA and logo

Hi, @nunder This caused by a bug in `geom_logo` function. I fixed the error and you can try your code snippet again in latest development ver.（ggmsa v1.1.2). grab the development...

Creat FASTA files from APE files

Hi, Chris Sorry for the late reply. Can you provide an example of the APE file? Thanks Lang