Protein secondary structure & domain annotation

[gezmi]

Hi,

this seems an awesome and very much needed package! I have 2 feature request: would it be possible to add protein secondary structure annotation (helices and beta-sheets) and also domain annotation (similar to the biotite package in python)?

Thank you!

[nyzhoulang]

Hi, @gezmi

I have 2 feature request: would it be possible to add protein secondary structure annotation (helices and beta-sheets) and also domain annotation (similar to the biotite package in python)?

Get it! Thanks for your feedback.
We will try to develop these functions in ggmsa.

Regards, Lang

[gezmi]

Thanks, that would be awesome and much needed! Maybe one more, that I usually miss from MSA visualization tools: the ability to highlight regions with either a) on one/few particular proteins b) all of the proteins. Would this be hard to implement or provide a code with other ggplot function?

[orangeSi]

Thanks, that would be awesome and much needed! Maybe one more, that I usually miss from MSA visualization tools: the ability to highlight regions with either a) on one/few particular proteins b) all of the proteins. Would this be hard to implement or provide a code with other ggplot function?

explore the msa maybe easier by html like this: https://orangesi.github.io/pymsaploter/ (support mark domain location and search by motif pattern)

[m3hdad]

feature request seconded!

[eernst]

Thirded! Domain annotation plotting would be fantastic.