Neil Shephard

Align arguments for `draw.ellipse()` and `draw.ellipse_perimeter()`

8

### Description: The [`draw.ellipse()`](https://scikit-image.org/docs/stable/api/skimage.draw.html#skimage.draw.ellipse) and [`draw.ellipse_perimeter()`](https://scikit-image.org/docs/stable/api/skimage.draw.html#skimage.draw.ellipse_perimeter) functions both allow the drawn image to be rotated but have different arugments for doing so. It would seem sensible and logical if both...

"skimage.draw.draw" requires "matplotlib >=3.3'

4

### Description: I'm using skimage in some generate simple shapes for use in tests. ### Way to reproduce: ## `conftest.py` ```python """Fixtures for tests.""" import numpy as np import numpy.typing...

Install dependencies from git using pip

5

I've read through the documentation and see that even if dependencies are in a `requirements.txt` they still need installing from the Notebook ([reference](https://jupyterlite.readthedocs.io/en/latest/howto/configure/simple_extensions.html#the-case-of-jupyter-widgets-and-custom-renderers)). I've used the [demo template](https://github.com/jupyterlite/demo) to set...

Add function to make nx Graph from Skeleton

8

Further to initial work by @jni to implement NetworkX based pruning I've finally worked out how to reconstruct `Skeleton` from the NetworkX graph by storing the `path_coordinates()` in the `edge...

Add support for iterative pruning based on user-specified discard conditions

21

First stab at iterative pruning.

How to cite Skan

2

I was curious if there is a method of citing Skan? Some thoughts on things that can be done to make it easier to cite Skan are... + Digital Object...

PRs #50 / #57 /#60 / #61 / #62 addressed the need for regression tests (see #48). Now that these are in place it is possible to start introducing finer...

Release to ORDA

4

We should automatically submit and upload releases to University of Sheffield [ORDA](https://www.sheffield.ac.uk/library/research-data-management/orda), a Figshare instance. This means the software will have a Digital Object Identifier (DOI) and aid in citation....

Numpy2 is due to be released later this year (first release candidate is scheduled 2024-02-01). This may introduce some breaking changes, a broad overview is available [here](https://pythonspeed.com/articles/numpy-2/). Mentioned in that...

Build multiple versions of documentation

7

I've recently worked out how to build multiple versions of documentation, including API references and host it on GitHub. As Clarity is now has several versions released and is starting...