ss3-source-code
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nmfs-ost
The source code for Stock Synthesis (SS3).
* Resolves issue #595 * is responsive to issue #5 ## What tests have been done? ### Where are the relevant files? ### What tests/review still need to be done?...
### Describe the bug @e-perl-NOAA reported "inf" values in the bootstraps of the mean size-at-age data for the BigSkate_2019 test model. I was able to replicate the issue in the...
### Describe the solution you would like. As discussed in https://github.com/nmfs-ost/ss3-doc/issues/222, automatically adding a link to the compiled executable to a PR discussion would make it easier to access those...
### Describe the solution you would like. This will be a step in implementation of #5 When an environmental index is used to compare to a dev vector, including recruitment...
### Describe the solution you would like. see discussion in #593 When using recdev option 1, the dev_vector with tuned bias adjustment forces the arithmetic mean recruitment of the time...
see email exchange with Richard McGarvey [McGarvey_Recapture_conditioned_tags.docx](https://github.com/nmfs-stock-synthesis/stock-synthesis/files/7419710/McGarvey_Recapture_conditioned_tags.docx) also see ideas in #11
### Describe the solution you would like. need for this came up in the North Sea sole 2024 assessment with Iago and Max probably redundant issue to #81 ### Describe...
This PR adds an error when you try to run MCMC with the setting do_recdev = 1. It was inspired by this discussion https://github.com/nmfs-ost/ss3-source-code/discussions/566 where a user noted getting bad...
### Issue description Need to fix the workflow files after Johnoel's branch is merged. @Rick-Methot-NOAA I added this to the change-log so that we know to include in the next...
### Describe the solution you would like. The bias adjustment ramp is too inflexible to track needed inflections in recruitment bias adjustment. A better approach would allow user to enter...