Natalie Clark

icon indicating an email [email protected]

icon company The Broad Institute of MIT and Harvard icon location Computational Scientist II in the Proteomics Platform at the Broad Institute

Results 6 comments of Natalie Clark

EnrichKegg still shows all pvalues even after specifying a specific pvalue cutoff

I am experiencing this same issue for all the enrichment functions. I am currently just filtering the `p.adjust` column manually, but surely this is not intended?

EnrichKegg still shows all pvalues even after specifying a specific pvalue cutoff

Hello, the `as.data.frame()` call works to appropriately filter the data matrix for me. To me, this was not clear from the current documentation. Thank you for the explanation.

Excel table creating problem

Hello Feng, This issue seems very specific to your file and/or operating system as multiple members of our group have been exporting Excel files recently with no issues. Can you...

Excel table creating problem

Hello Feng, Has your issue been resolved? Please let me know if you are still experiencing issues. Otherwise, I will close the issue. Thank you, Natalie

Excel table creating problem

Hello Feng, Based on the error message, my best guess is there is something wrong with your Perl installation which does not allow the Excel file to save. I would...

Excel table creating problem

Thanks for trying things out, Feng. As I've mentioned, we've had multiple users being able to use the Excel export. Also, you mentioned R 4.1 previously worked. The script you...