Nathan Brown

Calculating SAC on metagenome clusters

3

@luizirber, one more thing for today (not intending to distract you), it would be really interesting if you could calculate the species accumulation curve (SAC) for hash sets in clusters...

When I run phylosift, pplacer will run without the --groups option, but not with the --groups option. This doesn't finish: `pplacer --groups 15 -o concat.updated.1.jplace --verbosity 0 -j 12 -c...

Is process hanging or will it just take a while?

5

I love the concept for MetaCoAG; what a great idea! I'm trying to use your awesome tool to bin contigs from a 30 Gbp MEGAHIT metagenomic assembly with 35 million...