Nathan Brown
Nathan Brown
Has function 2 been added the the python API yet? I have a bare list of minhashes in a csv file that I'd like to convert into a signature object...
Have you already seen this? https://ieeexplore.ieee.org/abstract/document/9139876
Thank you, @Vini2! I will reach out to you via your contact form on your professional website in order to share the data. The data is proprietary and entails tens...
Brief update: I allowed `metacoag` to run for 6 days, but it was still stuck at running the `get_non_isolated` function. No errors, just very busy running that function. I believe...
Hi @Vini2, you're probably swamped - should we move ahead with trying to parallelize this on our end? If so, any hints or suggestions based on our attempt above?
I got a similar memory error running the following command: `rkmh filter -f /datapool/basespace/skinmg/235258034/Data/Intensities/BaseCalls/sample0031_S339_L001_R1_001.fastq.gz -r ~/beta_hpv.fna -k 21 -s 1000 -t 1` Here is the error msg: ``` double free...
A sub-optimal workaround in the meantime: use `rkmh stream` to extract read headers, then grep out the entire read record. `rkmh stream -t 1 -k 12 -s 2000 -r reference.fna...
Thank you!
Are there sketches of a reduced genome-representatives version of the GTDB rs220 release? Not complaining if not. Thank you, @ccbaumler, for what you've provided here!
Happy New Year! Just wondering if these databases have been posted publicly.