funannotate
funannotate copied to clipboard
nextgenusfs
Eukaryotic Genome Annotation Pipeline
**Good day! When I was trying to download the database for funannotate, I got an error. The command is `funannotate setup -d Fanno_db/ --install all`. The logfile as follow:** [Feb...
funannotate v1.8.12 `Funannotate annotate` failed when I included the argument `--antismash /path/to/annotate_misc/antiSMASH.results.gbk` because the file did not exist. I dug into it and discovered that annotate was removing the file...
**Are you using the latest release?** `funannotate v1.8.12` **Describe the bug** The logfile for funannotate predict seemed to show that everything ran ok. But the outputs (.protein.fa and .gff) contain...
version funannotate/1.8.5 running annotate with the command funannotate annotate -i /panfs/roc/groups/14/mcgaughs/drabe004/Funnannote_Full/MBRI_FINAL --force --busco_db actinopterygii --iprscan /panfs/roc/groups/14/mcgaughs/drabe004/Interprotscan/MBRIoutput.iprscan --cpus 8 Error and logfile: ******I am running this on output from predict ---...
**Are you using the latest release?** funannotate 1.8.9 **Describe the bug** I am running funannotate predict and I am getting an error about the diamond blastp database being incomplete. I...
I know there are a lot of dependencies with funannotate (it isn't ideal). I spent quite some time getting funannotate working on `conda`. However, as most of you know that...
**Are you using the latest release?** Yes, I am using it. **Describe the bug** The information that I received from the program is limited. Here is an example of the...
Now that NCBI had released their internal adapter contamination screening tool for public use (https://ncbiinsights.ncbi.nlm.nih.gov/2022/07/28/fcs-beta-tool/), would it be possible to add an option for FCS-adaptor to be run as part...
Hi, I used funannotate 1.8.3 to run the genome annotation. But I ran into these errors while running `funannotate predict` : ``` `WARNING The dataset you provided does not contain...
Hello I am using version 1.8.11 I ran the funnanotate command as follows: $ funannotate predict -i $genome -o $outdir_predict -s "species" --cpus 10 \ --protein_evidence $uniprot $uniref50 --rna_bam $rna_bam...
