funannotate

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Unable to annotate genomes using funannotate ?

12

Hi, I'm trying to annotate the genomes, end up in python error. Need help. CMD- `funannotate predict -i Llips.R.fasta -s zebrafish --protein_evidence /home/sunn/data/softwares/gnom/test/spades/backup/Abininew/refgenome/tanaka.gff -o Llips --cpus 16 --force > Llips.log...

sunnyEV

AntiSMASH data were not properly processed

6

**Are you using the latest release?** version: 1.8.9 **Describe the bug** AntiSMASH data do not seem to be incorporated properly during the annotate function. Although there was no error during...

jae0326

funannotate compare

4

Hi, I have been trying to compare 200 unannotated fungal genomes using fun annotate compare command. However, I keep running to this error: [Mar 29 04:09 PM]: Loading InterPro descriptions...

ShrutiKetan

Funannotate 1.8.9 Compare TypeError

5

I am using funannotate 1.8.9 version installed with conda (mamba). "funannotate compare -i Genome_one.gbk Genome_two.gbk Genome_three.gbk -o compare --cpus 4 --outgroup botrytis_cinerea.dikarya ------------------------------------------------------- [Apr 19 12:22 PM]: OS: Ubuntu 20.04,...

giriarteS

Phobious problems

5

Hi! I am having some problems with phobius annotation **Are you using the latest release?** funannotate v1.8.9 **Describe the bug** When I am trying to annotate the proteins obtained after...

Hoberti

Error parsing iprscan.xml during funannotate annotate, after local iprscan run

6

**Are you using the latest release?** using the latest docker image **Describe the bug** Error parsing iprscan.xml while running funannotate annotate command. xml was generated by local run of InterProScan5....

Rcperez

Can predict.py use my output folder for workspace instead of the directory of my input genome file?

15

Folks, Thank you VERY MUCH for this project. It has been incredibly valuable to us. I am using the tool in pipelines on a cloud platform (Illumina Connected Analytics) that...

Mark-A-Taylor

Funannotate test error

2

**Are you using the latest release?** 1.8.9 **Describe the bug** When running funannotate test -t all --cpus 90, I endup having the error below, despite of the "funannotate check --show-versions"...

rissidaniel

Not enough models to train augustus

1

Hi Jon! I have encountered a problem when running a new funannotate analysis with a new installation. As always, thank you so much for your help! L. **Are you using...

aberaslop

Issues downloading databases (Pfam and interpro)

4

Hi, Sorry that I do not have time to make this properly, meditate and push useful changes to the code. There are some issues in setupDB.py that do not allow...

ferninfm