funannotate
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nextgenusfs
Eukaryotic Genome Annotation Pipeline
When i am running funannotate predict, command line as follow: **funannotate predict -i masked_cleaned_assembly.fasta -o funannotate_out -s "Aspergillus oryzae" --cpus 16** Then there is some error in the **busco.log** file:...
This is essentially the same error reported in #939 I see the following: ``` [Jul 28 12:10 PM]: Predicting secreted proteins with SignalP Traceback (most recent call last): File "/home/kodalivk/.conda/envs/funannotate/bin/funannotate",...
Dear funannotate team Firstly thanks for the fantastic work on this pipeline. I have been using funannotate as part of my genome annotation work in conjunction with other tools to...
I ran funannotate for genome annotation and accomplished the first two steps, clean and mask, now I have the masked file and need to download the SRA datasets through prefetch...
I am using funannotate to annotate genome of plant with following command funannotate train -i cicar.CDCFrontier_Cook_v3_cleaned_sorted_masked.fa -o funn --left /media/shanmu/Shanmu_IIPR5/Senthil_Nitrate/C1/C1_forward_paired.fq.gz --right /media/shanmu/Shanmu_IIPR5/Senthil_Nitrate/C1/C1_reverse_paired.fq.gz --stranded no --strain "Cicer arietinum" --isolate CDC_Frontier --cpus...
Hi, I noticed there are some tmp files after the predict step located in the "predict_misc" folder. The log suggests to run update and then species step. Will this resolve...
