naity2

KeyError: 'base' when running `tl.rank_genes_groups`

5

- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [x] (optional)...

Why `clonotype_imbalance` is deprecated?

5

Hi @grst, I was wondering why `clonotype_imbalance` is deprecated because of `clonotype_modularity`? `clonotype_imbalance` seems to me still a very useful tool if one wants to compare how the clonal compositions...

Fusion mounts not working

1

Hi Team, I enabled Fusion mounts as [instructed](https://help.tower.nf/22.1/compute-envs/aws-batch/#compute-environment) to mount the S3 bucket (`s3://bucket`) specified in Pipeline work directory for AWS batch jobs. However, I tested it by simply running...

Calling `partition_pdf` with `infer_table_structure=True` throws a CUDA RuntimeError. I greatly appreciate any help in resolving this issue! ### Code: ```Python from unstructured.partition.pdf import partition_pdf raw_pdf_elements = partition_pdf( filename="1_Presentation.pdf", extract_images_in_pdf=True, infer_table_structure=True,...

[ERROR] [normalize] Error Message

5

Hi @polyactis, First, thank you for this great tool. I aligned my reads to the reference genome included in `hs38d1` provided by `Accucopy` and sorted the bam files with duplicates...