Meng Wang

Support for mcool files with hic_matrix_square

3

**Welcome to the pyGenomeTracks GitHub repository! Before opening the issue please check that the following requirements are met :** - [ x ] Search whether this issue (or a similar...

Hi, I run into the following error while trying to run some simulated dataset. We have several settings, and two settings gave us the same error regardless of parameters settings....

Error running Ramani data

2

Hello, After I installed higashi, I downloaded the ramani dataset ([this one](https://drive.google.com/drive/u/0/folders/1S0KOMAj60MxQP6mgPV1OKjn_J-lVpzKM)), json file and tried to run the analysis. ``` config = "config_ramani.JSON" higashi_model = Higashi(config) higashi_model.process_data() ``` And...

Input File Naming Convention

1

there is a some sort of…bug (idk if i’d call it that) in naming the input files. Basically, if the file names contain a number by itself (for example, our...