Meng Wang

icon company Nationwide Children's Hospital icon location Columbus, Ohio icon location Senior bioinformatics scientist at Nationwide Children's Hospital.

Results 5 comments of Meng Wang

hicPCA and compartmentalization. Setting interaction range.

This is a very, very bad idea. PCA is not numerical addition/multiplication. It is a matrix transformation, so when you do a subset of your data, you change the space...

Support for mcool files with hic_matrix_square

Thanks! I Appreciate the quick response.

Support of minimap2, bam mem2 and bwa aln

if you were to add those mapper, would you consider adding chromap as well? In our experience it performs just as well and is significantly faster.

Error running Ramani data

yup. that fixed it. Thanks.

AttributeError: module 'rpy2.robjects.numpy2ri' has no attribute 'numpy2ri'

This is still not fixed on the main page.