Mathias Witte Paz

Mapping categorical values to dots in intersection matrix

1

**Objective** I would like to simplify this plot by encoding the classes 1 and 2 (see label) on the nodes themselves, for example using color, but still keep the different...

DIAMOND Verification: local variable 'idxDict' referenced before assignment

5

After running FeGenie with a reference database (nr.dmnd) I get the error shown below. As an output I get the complete FeGenie-summary.csv and an empty file FeGenie-summary-altered.csv. I think I...

Setting --threads in spacedust aa2foldseek fails

1

## Expected Behavior Fixing the maximal number of threads used. ## Current Behavior Error message "Duplicate parameter --threads" ## Steps to Reproduce (for bugs) Please make sure to execute the...

How to interpret lddtfull?

2

## Context I am comparing the structure of proteins, but rather than focusing on the general similarity, I want to focus on the similarity at specific domains (for example, around...