Setting --threads in spacedust aa2foldseek fails

[mwittep]

Expected Behavior

Fixing the maximal number of threads used.

Current Behavior

Error message "Duplicate parameter --threads"

Steps to Reproduce (for bugs)

Please make sure to execute the reproduction steps with newly recreated and empty tmp folders. spacedust aa2foldseek --threads 64 setDB refDB tmpFolder Also tried: spacedust aa2foldseek setDB refDB tmpFolder --threads 64

spacedust Output (for bugs)

Please make sure to also post the complete output of spacedust. You can use gist.github.com for large output. Test 1 -> Duplicate parameter --threads Test 2 -> Missing argument --threads

Context

Providing context helps us come up with a solution and improve our documentation for the future.

Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used (The string after "MMseqs Version:" when you execute spacedust without any parameters): c2d6f0de4efbe33d65825957cd59e5507091c619
• Which spacedust version was used (Statically-compiled, self-compiled, Conda, etc.): Statically compiled
• For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation: -
• Server specifications (especially CPU support for AVX2/SSE and amount of system memory): 64cores, 377GB
• Operating system and version: NAME="Ubuntu" VERSION="20.04.6 LTS (Focal Fossa)"

[RuoshiZhang]

This should be fixed with 16b0203