Mujahid Ali
Mujahid Ali
Hi, @joachimwolff I also have a similar issue like @Drosophilid. I am interested to check hicAggregateContacts for cis-elements between the chromosomes (inter-chr mode), using default parameters. It took 3 days...
Hi @LeilyR can you please suggest something for above #758 Thank you
Hi@LeilyR, a polite reminder. can you please check the issue #758
Hi @gtrichard, It's not a bug but a very basic question for general understanding regarding hicAggregate. #/apps/python3/3.9.0/bin/python3 #/apps/hicexplorer/3.7.1/bin/hicAggregateContacts I'm a bit confused about how exactly hicAggregate calculates the interaction between...
Okay, thank you @lldelisle
Hi @MarineBergot, No! I asked the writer of the above circus figure, he said he did it manually.
Hi @liz-is I'm a beginner and have a very basic question. can we also use "fanc compare" instead of "chess" to see the 3D chromatin organization differences between two developmental...
Hi @kaukrise, Thank you very much for the detailed explanation :) It really helps to get a basic understanding before starting my analysis. I have run CHESS for 3D chromatin...