Mitchell Stanton-Cook

icon indicating a website link https://pipelin.es/ icon indicating an email [email protected]

icon company @Xero icon location Brisbane, Australia icon location DevOps Enablement @Xero. Previously: Eng Director @Mastercard, Team Lead @Ladbrokes, Solutions Consultant @itoc. Likes dev, ops, sec, ci, cd, clouds

Results 6 comments of Mitchell Stanton-Cook

Install/activation fails if virtualenvwrapper is installed globally

With a system wide install of virtualenvwrapper.sh, ~/.venvburrito/bin/virtualenvwrapper.sh is not present and sourcing post install fails. A symbolic link to the global install fixes this.

Handle cases where matrix is very simple (& cannot be clustered)

May be related: UserWarning: Attempting to set identical bottom==top results in singular transformations; automatically expanding. bottom=0, top=0.0

Investigate the effects of using hsp.identities/float(record.query_length) >= tol vs max_identity >= tol

Thanks Nabil. Discussed with Brian & Nouri today and am going to implement some additional scoring schemes. I like the one above.

Better exception handling if query directory is empty or do_run fails

Nouri also wrote some PBS scripts where she managed to delete/overwrite "paralell run". Need to lock a directory as well.

database validator

This is a solution to the #30

Is there an option for Ray to output reads not used in the assembly? Is this in the AMOS file?

Hi Seb, I was interested using the protocol outlined in: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0031002 I was having no such luck with the Ray amos file. I contacted the author and this was his...