Henry E. Miller

Thank you for creating this useful tool! I was just wondering if you have plans to support bzip2 and xz compression for `s3readRDS`? I think this would be very valuable...

### Description of feature The feature I'm hoping for is merging of technical replicates / runs (SRRs) within each sample/experiment (SRX/GSM/etc). I would like the fastq files to be concatenated...

ERROR: A label with name 'x' already exists for workspace 'Altos_Labs_Inc'

1

Whenever I am attempting to run something like the following: ```shell tw launch FetchNGS_NFcore --params-file fetchngs/fetchngs_tower_params.3.json --config ../src/fetchngs_nextflow.config --compute-env xyz --labels x,y ``` I get this error: ```shell ERROR: A...

Hi -- really love the BioJupies service. I think adding the ability to select specific GEO samples to compare would really add a lot of utility. That way you could...

### Description of feature Would it be possible to support fetching data/metadata using GSA accessions (CRR/CRX/CRS/CRA)? E.g., [CRR1164885](https://ngdc.cncb.ac.cn/gsa/browse/CRA016683/CRR1164885)

R0 example stuck in loop

1

With the default R0 example, I am seeing the agent get stuck in a loop in which it fails to appropriately format responses. sglang running like so: ```bash python -m...