michalk8

Hi @wangjiawen2013 , > squidpy will re-download the interaction database. sometimes it takes a long time to download because of the poor internet. So I downloaded omnipath database using omnipath.interactions.import_intercell_network()...

Hi @dnjst , thanks for the suggestions, I think it's great! Regarding impl., think it should not be a problem (will take a look in the upcoming weeks). The only...

2 questions: - do we wanna go for `conda-forge` or `bioconda`? no strong preference - shall we package `napari/pyqt` as well or create a subpackage?

@giovp I've added this for the `1.1.1` patch release (closely related to #341), but feel free to remove if it's too much/should be done later.

Hi @K10308 , `res_means` just stored the test statistic (the observed means). The simplest way to modify the code would be to do: ```python for _ in perms: # initialize...

Hi @morriso1 , for this, you'd need to install the latest version as `pip install git+https://github.com/theislab/squidpy@dev` where we've added support for dask. Also, our `ImageContainer` only supports 4D images, so...

> Renaming to 'well' to 'z' enables an image to be added to the ImageContainer, however, it no longer supports multi-index as z coordinates have been converted to

Hi @wangjiawen2013 , could you please a minimal reproducible example for me to look at?

So if I understand correctly, the problem is that if removing `[11]`, you get something like the figure below  where, e.g., cluster `1` and `2` share the same color...

Hi @HelloWorldLTY , could you please provide a small code snippet to reproduce?