michaelsteidel86

Analysis of SILAC samples with MBR?

3

Is there a way to analyze SILAC samples including match-between runs with FragPipe? Thanks in advance! Michael

Information on spectra considered for TMTintegrator-based quant

4

Dear Fengchao/Alexey, is there actually a way to extract information on which spectra were actually considered for TMTintegrator-based quan? This information would be highly useful in individual cases (i.e. which...

Missing the documentation on how to use the GUI to train a model for in-silico prediction

3

Dear AlphaPeptDeep developers, I am wondering if I could train a model to predict CSS and RTs for diaPASEF based data analysis of samples including a non-common PTM. Would have...

DIA-NN - automated handling of challenging data

2

### Description of feature Dear all, we're currently considering making use of the msquant pipeline for processing of large sample cohort DIA data. Testing the DIA-NN GUI I took note...