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Analysis of SILAC samples with MBR?

Open michaelsteidel86 opened this issue 3 years ago • 3 comments

Is there a way to analyze SILAC samples including match-between runs with FragPipe?

Thanks in advance! Michael

michaelsteidel86 avatar Aug 08 '22 09:08 michaelsteidel86

Currently, no. But we are working on it. Will be available soon.

Best,

Fengchao

fcyu avatar Aug 08 '22 14:08 fcyu

@fcyu is analysis of SILAC samples possible for diaPASEF at the moment? Is the instruction available somewhere you could point me to? So far we've been doing this with DIANN. Thank you.

haianhle avatar Oct 21 '22 10:10 haianhle

No, it does not support diaPASEF.

Best,

Fengchao

fcyu avatar Oct 21 '22 13:10 fcyu

Hi Fengchao,

has situation changed in the meantime? Does current version (Fragpipe / Ionquant) support MBR for SILAC samples?

Thanks Michael

michaelsteidel86 avatar May 11 '23 08:05 michaelsteidel86

Hi Michael,

It support MBR for SILAC now. We will release a new version soon. If you want to try the pre-release version, please send an email to yufe AT umich.edu

Best,

Fengchao

fcyu avatar May 11 '23 13:05 fcyu