Madu Nzerem

Difference between model 1 and 2

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What's the difference between model 1 and 2? I can't seem to find a description in the readme or the bio archive paper. Thanks

MMseqs search not finding exact and close-exact hits

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## Expected Behavior Searching proteins against a database with similar and exact proteins (from bacterial refseq proteome) should return hits with similar and exact matches. ## Current Behavior Running mmseqs...

Hi, I'm attempting to call convertalis on an alignment database computed with mmseqs GPU accelerated search. Here are the calls I'm running Ran makepaddedseqdb using default settings. ``` mmseqs search...