Mahmoud A. Bassal

Corrupt quality values

1

Hi Ive got an unaligned BAM file from a pac bio long-read run which ive converted to a fq using bedtools. I am then trying to use pyfastx to play...

When setting the text angle for the number of elements in the vertical sets, the number appears off to the side and is not aligned with the bars drawn. Is...

[Feature Request] Adding PIPSeq barcode detection

1

**Is your feature request related to a problem? Please describe.** No. There is a new company, Fluent Biosciences and their sc product is [PIPSeq](https://www.fluentbio.com/products/pipseq-3-single-cell-rna-kit/). This tech (imo) is promising in...

Hi In your online tutorial you show how you can add a heatmap to the outside of an initialized ideogram. Later in the same example you show you can add...

HI when running using the monomer_casp14 preset, get the following error ``` raceback (most recent call last): File "/home/.../tools/ParallelFold/run_alphafold.py", line 491, in app.run(main) File "/home/.../anaconda3/envs/parafold/lib/python3.8/site-packages/absl/app.py", line 312, in run _run_main(main,...

hi there is there any more details you can share on how to best set the -sz and -st theresholds for datasets? particularly for lower resolution calls? the documentation says...

hi, i cant seem to install fst-pso. it errors out with the following ``` Collecting fst-pso Using cached fst-pso-1.8.1.tar.gz (18 kB) Preparing metadata (setup.py) ... error error: subprocess-exited-with-error × python...