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pdb_seqres_database_path must not be set when running with "--model_preset=monomer_casp14".

Open mbassalbioinformatics opened this issue 2 years ago • 0 comments

HI

when running using the monomer_casp14 preset, get the following error

raceback (most recent call last):
  File "/home/.../tools/ParallelFold/run_alphafold.py", line 491, in <module>
    app.run(main)
  File "/home/.../anaconda3/envs/parafold/lib/python3.8/site-packages/absl/app.py", line 312, in run
    _run_main(main, args)
  File "/home/.../anaconda3/envs/parafold/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main
    sys.exit(main(argv))
  File "/home/.../tools/ParallelFold/run_alphafold.py", line 362, in main
    _check_flag('pdb_seqres_database_path', 'model_preset',
  File "/home/.../tools/ParallelFold/run_alphafold.py", line 163, in _check_flag
    raise ValueError(f'{flag_name} must {verb} set when running with '
ValueError: pdb_seqres_database_path must not be set when running with "--model_preset=monomer_casp14".

suggestions to rectify this please?

mbassalbioinformatics avatar Mar 18 '23 12:03 mbassalbioinformatics