Patchy
Patchy
Ah nevermind, I just figured out that lddt is already part of the trRosetta2 package! I changed the path to reference trRosetta2/lddt/lddt and now everything works!
Also I just noticed crop="dicont" should be crop="discont" in run_pipeline.sh
What error are you getting? It really is just a question of adjusting the proper paths, because in some cases the paths are fixed.
line 68 in run_pipeline.sh still says crop="dicont"
Glad to help, thanks for sharing the code!! I had one question, do you think there is a protein size limit that I can fold on a single 11Gb GPU?...
I had it during trRefine, like I said, anything below 900AA ran fine, I am now running a 1400AA protein to see if I get the same error. This is...
From what I found, this error might come from when the tensorflow tries to allocate bigger memory chunks, is it possible to make it allocate smaller chunks?
I have managed to solve the issue by reducing the limit for cropping to 500: `if [ $LEN -gt 500 ] then crop="discont" else crop="cont" fi` Is there a downside...
Thank you for the answer! I will keep the 500 value for now and report back if I see any issues.
Okay, so after I have pulled the newest version of the code from github, I get the following error right after running hhsearch: /home/patchy/trRosetta2/run_pipeline.sh: line 53: 14657 Segmentation fault (core...