Patchy
Patchy
I have 128 Gb of RAM and don't see it running out of memory, I did not have issue with the previous version of the code where hhsuite was called...
I can confirm the segmentation fault only happens during the hhsearch step and only in the newly built conda environment, in the environment built in the previous version it works...
Removing the hhsuite from the conda environment fixes the segmentation fault error, I could not figure out why it occurs though.
I am still having trouble folding proteins above 800AA with the RTX 2080 Ti with 11 Gb VRAM. During the trRefine step, the tensorflow module runs out of memory. Ideally...
Thanks a lot for the tip!!! I will give it a go and let you know. I will probably just make it an conditional statement to run anything smaller than...
> Yeah, we are also having same issues with long proteins. An easy workaround is to run trRefine on a cpu by modifying line #131 of the `run_pipeline.sh` script to:...
agreed!